Package: RchivalTag 0.2.1

RchivalTag: Analyzing and Interactive Visualization of Archival Tagging Data

A set of functions to generate, access and analyze standard data products from archival tagging data.

Authors:Robert K. Bauer

RchivalTag_0.2.1.tar.gz
RchivalTag_0.2.1.zip(r-4.5)RchivalTag_0.2.1.zip(r-4.4)RchivalTag_0.2.1.zip(r-4.3)
RchivalTag_0.2.1.tgz(r-4.4-any)RchivalTag_0.2.1.tgz(r-4.3-any)
RchivalTag_0.2.1.tar.gz(r-4.5-noble)RchivalTag_0.2.1.tar.gz(r-4.4-noble)
RchivalTag_0.2.1.tgz(r-4.4-emscripten)RchivalTag_0.2.1.tgz(r-4.3-emscripten)
RchivalTag.pdf |RchivalTag.html✨
RchivalTag/json (API)

# Install 'RchivalTag' in R:
install.packages('RchivalTag', repos = c('https://rkbauer.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rkbauer/r_package_rchivaltag/issues

On CRAN:

data-visualidepthdepth-temperature-profilesdygraphsggpotleafletminipatpelagicplotlysatellitesensorspatialstar-odditemperaturetime-seriestrackswildlife-computers

3.59 score 1 stars 26 scripts 306 downloads 37 exports 131 dependencies

Last updated 2 months agofrom:f5a4641144. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-winNOTENov 08 2024
R-4.5-linuxNOTENov 08 2024
R-4.4-winOKNov 08 2024
R-4.4-macOKNov 08 2024
R-4.3-winOKNov 08 2024
R-4.3-macOKNov 08 2024

Exports:abacus_plotbin_TempTSclassify_DayTimecombine_histosdy_DepthTSdy_TSempty.plot_TSget_DayTimeLimitsget_geoposget_thermalstratggboxplot_DepthTS_by_hourggplot_geoposggplotly_geoposhist_tadhist_tatimage_TempDepthProfilesinterpolate_PDTsinterpolate_TempDepthProfilesleaflet_geoposmerge_histosplot_data_coverageplot_DepthTempTSplot_DepthTempTS_resampledplot_DepthTempTS_resampled_PDTplot_DepthTSplot_TSread_histosread_PDTread_TSrebin_histosresample_DepthTempTSresample_PDTresample_TSsimulate_DepthTSts2histosunmerge_histosupdate_leaflet_elementId

Dependencies:abindaskpassbase64encbitbit64bslibcachemclassclassIntcleangeoclicliprcolorspacecolourpickercommonmarkcpp11crayoncrosstalkcurldata.tableDBIdigestdotCall64dplyrdygraphse1071evaluateextrafontextrafontdbfansifarverfastmapfieldsfontawesomefsgenericsggeditggplot2gluegtablehighrhmshtmltoolshtmlwidgetshttpuvhttrisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleafletleaflet.extras2leaflet.providerslifecyclelubridatemagrittrmapdatamapsMASSMatrixmemoisemgcvmimeminiUImunsellncdf4nlmeoceanmapopensslpillarpkgconfigplotlyplotrixplyrpngpracmaprettyunitsprogresspromisesproxypurrrR6rappdirsrasterRColorBrewerRcppreadrreshape2rlangrmarkdownrstudioapiRttf2pt1s2sassscalessfshinyshinyAceshinyBSshinyjssourcetoolsspspamstringistringrsuntoolssysterratibbletidyrtidyselecttimechangetinytextzdbunitsutf8vctrsviridisLitevroomwithrwkxfunxtablextsyamlzoo

Readme and manuals

Help Manual

Help pageTopics
bin depth-temperature time series databin_TempTS
Classifying the time period of the dayclassify_DayTime
combine lists of TAD/TAT frequency datacombine_histos
plot time series data via the dygraphs interactive time series plotting interface.dy_DepthTS dy_TS
Estimating the timing of sunrise, sunset, astronomical and nautical twilight eventsget_DayTimeLimits
estimate thermal stratification indicesget_thermalstrat
Boxplot on hourly aggregated DepthTS recordsggboxplot_DepthTS_by_hour
reads and plots geolocation estimates derived from archival tagging dataget_geopos ggplot_geopos
Converts a ggplot2 object from ggplot_geopos() to plotlyggplotly_geopos
Time-at-Depth histogramhist_tad
Time-at-Temperature histogramhist_tat
plots interpolated daily temperature at depth profilesimage_TempDepthProfiles
interpolate daily temperature at depth profilesinterpolate_PDTs interpolate_TempDepthProfiles
reads and plots geolocation estimates derived from archival tagging dataleaflet_geopos
merge and/or rebin TAD/TAT-frequency datamerge_histos rebin_histos
Abacus plot to illustrate the data coverage of different data products per tag throughout their deployment period.abacus_plot plot_data_coverage
plot Depth Temperature time series dataplot_DepthTempTS plot_DepthTempTS_resampled plot_DepthTempTS_resampled_PDT
plot time series dataempty.plot_TS plot_DepthTS plot_TS
RchivalTag - Analyzing and Interactive Visualization of Archival Tagging DataRchivalTag
reads a TAD/TAT-histogram file from archival tagsread_histos
read PDT data from archival one or multiple tagsread_PDT
reads Time Series Data from Archival Tagsread_TS
resample temperature at depth data from interpolated daily temperature at depth profiles or time series dataresample_DepthTempTS resample_PDT
resample time series data at a lower resolutionempty.resample_TS resample_TS
simulate depth time series datasimulate_DepthTS
convert depth and temperature time series data to discrete Time-at-Depth and Time-at-Temperature data (histogram data)ts2histos
unmerge previously grouped or merged lists of TAD/TAT frequency dataunmerge_histos
update elementID of the leaflet map to avoid rendering issues in RMarkdownupdate_leaflet_elementId